Optimizing exosomal RNA isolation for RNA-Seq analyses of archival sera specimens

RNA Isolation (Small RNA Extraction). Fatemeh Mehrpooyan*

RNA-Seq Bayesian Network Exploration of Immune System in Bovine

Background: The stress is one of main factors effects on production system. Several factors (both genetic and environmental elements) regulate immune response to stress. Objectives: In order to determine the major immune system regulatory genes underlying stress responses, a learning Bayesian network approach for those regulatory genes was applied to RNA-...

Importance of RNA isolation methods for analysis of exosomal RNA: evaluation of different methods.

Exosomes are small RNA containing vesicles of endocytic origin, which can take part in cell-to-cell communication partly by the transfer of exosomal RNA between cells. Exosomes are released by many cells and can also be found in several biological fluids including blood plasma and breast milk. Exosomes differ compared to their donor cells not only in size but also in RNA, protein and lipid comp...

Updating RNA-Seq analyses after re-annotation

UNLABELLED The estimation of isoform abundances from RNA-Seq data requires a time-intensive step of mapping reads to either an assembled or previously annotated transcriptome, followed by an optimization procedure for deconvolution of multi-mapping reads. These procedures are essential for downstream analysis such as differential expression. In cases where it is desirable to adjust the underlyi...

Glimma: Interactive Graphics for RNA-seq Analyses User’s Guide